SrasV1, Main, Exploration, bibRecord, 000131

The global spread of 2019-nCoV: a molecular evolutionary analysis

Identifieur interne : 000131 ( Main/Exploration ); précédent : 000130; suivant : 000132

The global spread of 2019-nCoV: a molecular evolutionary analysis

Auteurs : Domenico Benvenuto [Italie] ; Marta Giovanetti [Brésil] ; Marco Salemi [États-Unis] ; Mattia Prosperi [États-Unis] ; Cecilia De Flora [Italie] ; Luiz Carlos Junior Alcantara [Brésil] ; Silvia Angeletti [Italie] ; Massimo Ciccozzi [Brésil]

Source :

Pathogens and Global Health [ 2047-7724 ] ; 2020.

RBID : PMC:7099638

Descripteurs français

KwdFr :
- ADN viral (génétique), Analyse de séquence de protéine, Animaux, Chine (épidémiologie), Chiroptera (virologie), Coronavirus (génétique), Coronavirus (isolement et purification), Flambées de maladies, Génome viral, Humains, Infections à coronavirus (génétique), Infections à coronavirus (virologie), Infections à coronavirus (épidémiologie), Pandémies, Phylogénie, Pneumopathie virale (génétique), Pneumopathie virale (virologie), Pneumopathie virale (épidémiologie), Réservoirs d'agents pathogènes (virologie), Santé mondiale, Théorème de Bayes, Zoonoses (génétique), Zoonoses (épidémiologie), Évolution moléculaire.
MESH :
- génétique : ADN viral, Coronavirus, Infections à coronavirus, Pneumopathie virale, Zoonoses.
- isolement et purification : Coronavirus.
- virologie : Chiroptera, Infections à coronavirus, Pneumopathie virale, Réservoirs d'agents pathogènes.
- épidémiologie : Chine, Infections à coronavirus, Pneumopathie virale, Zoonoses.
- Analyse de séquence de protéine, Animaux, Flambées de maladies, Génome viral, Humains, Pandémies, Phylogénie, Santé mondiale, Théorème de Bayes, Évolution moléculaire.
Wicri :
- geographic : République populaire de Chine.

English descriptors

KwdEn :
- Animals, Bayes Theorem, Betacoronavirus (genetics), China (epidemiology), Chiroptera (virology), Coronavirus (genetics), Coronavirus (isolation & purification), Coronavirus Infections (epidemiology), Coronavirus Infections (genetics), Coronavirus Infections (virology), DNA, Viral (genetics), Disease Outbreaks, Disease Reservoirs (virology), Evolution, Molecular, Genome, Viral, Global Health, Humans, Pandemics, Phylogeny, Pneumonia, Viral (epidemiology), Pneumonia, Viral (genetics), Pneumonia, Viral (virology), Sequence Analysis, Protein, Zoonoses (epidemiology), Zoonoses (genetics).
MESH :
- chemical , genetics : DNA, Viral.
- geographic , epidemiology : China.
- epidemiology : Coronavirus Infections, Pneumonia, Viral, Zoonoses.
- genetics : Betacoronavirus, Coronavirus, Coronavirus Infections, Pneumonia, Viral, Zoonoses.
- isolation & purification : Coronavirus.
- virology : Chiroptera, Coronavirus Infections, Disease Reservoirs, Pneumonia, Viral.
- Animals, Bayes Theorem, Disease Outbreaks, Evolution, Molecular, Genome, Viral, Global Health, Humans, Pandemics, Phylogeny, Sequence Analysis, Protein.

Abstract

ABSTRACT

The global spread of the 2019-nCoV is continuing and is fast moving, as indicated by the WHO raising the risk assessment to high. In this article, we provide a preliminary phylodynamic and phylogeographic analysis of this new virus. A Maximum Clade Credibility tree has been built using the 29 available whole genome sequences of 2019-nCoV and two whole genome sequences that are highly similar sequences from Bat SARS-like Coronavirus available in GeneBank. We are able to clarify the mechanism of transmission among the countries which have provided the 2019-nCoV sequence isolates from their patients. The Bayesian phylogeographic reconstruction shows that the 2019–2020 nCoV most probably originated from the Bat SARS-like Coronavirus circulating in the Rhinolophus bat family. In agreement with epidemiological observations, the most likely geographic origin of the new outbreak was the city of Wuhan, China, where 2019-nCoV time of the most recent common ancestor emerged, according to molecular clock analysis, around November 25^th, 2019. These results, together with previously recorded epidemics, suggest a recurring pattern of periodical epizootic outbreaks due to Betacoronavirus. Moreover, our study describes the same population genetic dynamic underlying the SARS 2003 epidemic, and suggests the urgent need for the development of effective molecular surveillance strategies of Betacoronavirus among animals and Rhinolophus of the bat family.

Url:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7099638

DOI: 10.1080/20477724.2020.1725339
PubMed: 32048560
PubMed Central: 7099638

Affiliations:

Brésil, Italie, États-Unis

Le document en format XML

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<front><div type="abstract" xml:lang="en"><title>ABSTRACT</title>
<p>The global spread of the 2019-nCoV is continuing and is fast moving, as indicated by the WHO raising the risk assessment to high. In this article, we provide a preliminary phylodynamic and phylogeographic analysis of this new virus. A Maximum Clade Credibility tree has been built using the 29 available whole genome sequences of 2019-nCoV and two whole genome sequences that are highly similar sequences from Bat SARS-like Coronavirus available in GeneBank. We are able to clarify the mechanism of transmission among the countries which have provided the 2019-nCoV sequence isolates from their patients. The Bayesian phylogeographic reconstruction shows that the 2019–2020 nCoV most probably originated from the Bat SARS-like Coronavirus circulating in the <italic>Rhinolophus</italic>
 bat family. In agreement with epidemiological observations, the most likely geographic origin of the new outbreak was the city of Wuhan, China, where 2019-nCoV time of the most recent common ancestor emerged, according to molecular clock analysis, around November 25<sup>th</sup>
, 2019. These results, together with previously recorded epidemics, suggest a recurring pattern of periodical epizootic outbreaks due to <italic>Betacoronavirus</italic>
. Moreover, our study describes the same population genetic dynamic underlying the SARS 2003 epidemic, and suggests the urgent need for the development of effective molecular surveillance strategies of <italic>Betacoronavirus</italic>
 among animals and <italic>Rhinolophus</italic>
 of the bat family.</p>
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<back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Weiss, Sr" uniqKey="Weiss S">SR Weiss</name>
</author>
<author><name sortKey="Leibowitz, Jl" uniqKey="Leibowitz J">JL. Leibowitz</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Drosten, C" uniqKey="Drosten C">C Drosten</name>
</author>
<author><name sortKey="Gunther, S" uniqKey="Gunther S">S Günther</name>
</author>
<author><name sortKey="Preiser, W" uniqKey="Preiser W">W Preiser</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Zhu, N" uniqKey="Zhu N">N Zhu</name>
</author>
<author><name sortKey="Zhang, D" uniqKey="Zhang D">D Zhang</name>
</author>
<author><name sortKey="Wang, W" uniqKey="Wang W">W Wang</name>
</author>
</analytic>
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<biblStruct><analytic><author><name sortKey="Lu, H" uniqKey="Lu H">H Lu</name>
</author>
<author><name sortKey="Stratton, Cw" uniqKey="Stratton C">CW Stratton</name>
</author>
<author><name sortKey="Tang, Yw" uniqKey="Tang Y">YW Tang</name>
</author>
</analytic>
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<biblStruct><analytic><author><name sortKey="Ji, W" uniqKey="Ji W">W Ji</name>
</author>
<author><name sortKey="Wang, W" uniqKey="Wang W">W Wang</name>
</author>
<author><name sortKey="Zhao, X" uniqKey="Zhao X">X Zhao</name>
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<biblStruct><analytic><author><name sortKey="Lau, Sk" uniqKey="Lau S">SK Lau</name>
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   |texte=   The global spread of 2019-nCoV: a molecular evolutionary analysis
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The global spread of 2019-nCoV: a molecular evolutionary analysis

The global spread of 2019-nCoV: a molecular evolutionary analysis

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